Table of Contents
Editorial (pp. 4-5)
Roger Bivand
Contributed Research Articles
iotools: High-Performance I/O Tools for R (p. 6)
Taylor Arnold, Michael J. Kane, Simon Urbanek
IsoGeneGUI: Multiple Approaches for Dose-Response Analysis of Microarray Data Using R (p. 14)
Martin Otava, Rudradev Sengupta, Ziv Shkedy, Dan Lin, Setia Pramana, Tobias Verbeke, Philippe Haldermans, Ludwig A. Hothorn, Daniel Gerhard, Rebecca M. Kuiper, Florian Klinglmueller, Adetayo Kasim
Network Visualization with ggplot2 (p. 27)
Sam Tyner, François Briatte, Heike Hofmann
OrthoPanels: An R Package for Estimating a Dynamic Panel Model with Fixed Effects Using the Orthogonal Reparameterization Approach (p. 60)
Mark Pickup, Paul Gustafson, Davor Cubranic, Geoffrey Evans
The mosaic Package: Helping Students to `Think with Data’ Using R (p. 77)
Randall Pruim, Daniel T Kaplan, Nicholas J Horton
smoof: Single- and Multi-Objective Optimization Test Functions (p. 103)
Jakob Bossek
minval: An R package for MINimal VALidation of Stoichiometric Reactions (p. 114)
Daniel Osorio, Janneth González, Andrés Pinzón
Working with Daily Climate Model Output Data in R and the futureheatwaves Package (p. 124)
G. Brooke Anderson, Colin Eason, Elizabeth A. Barnes
alineR: an R Package for Optimizing Feature-Weighted Alignments and Linguistic Distances (p. 138)
Sean S. Downey, Guowei Sun, Peter Norquest
Implementing a Metapopulation Bass Diffusion Model using the R Package deSolve (p. 153)
Jim Duggan
MDplot: Visualise Molecular Dynamics (p. 164)
Christian Margreitter, Chris Oostenbrink
On Some Extensions to GA Package: Hybrid Optimisation, Parallelisation and Islands Evolution (p. 187)
Luca Scrucca
imputeTS: Time Series Missing Value Imputation in R (p. 207)
Steffen Moritz, Thomas Bartz-Beielstein
The NoiseFiltersR Package: Label Noise Preprocessing in R (p. 219)
Pablo Morales, Julián Luengo, Luís P.F. Garcia, Ana C. Lorena, André C.P.L.F. de Carvalho, Francisco Herrera
coxphMIC: An R Package for Sparse Estimation of Cox Proportional Hazards Models via Approximated Information Criteria (p. 229)
Razieh Nabi, Xiaogang Su
Update of the nlme Package to Allow a Fixed Standard Deviation of the Residual Error (p. 239)
Simon H. Heisterkamp, Engelbertus van Willigen, Paul- Matthias Diderichsen, John Maringwa
EMSaov: An R Package for the Analysis of Variance with the Expected Mean Squares and its Shiny Application (p. 252)
Hye-Min Choe, Mijeong Kim, Eun-Kyung Lee
GsymPoint: An R Package to Estimate the Generalized Symmetry Point, an Optimal Cut-off Point for Binary Classification in Continuous Diagnostic Tests (p. 262)
Mónica López-Ratón, Elisa M. Molanes-López, Emilio Letón, Carmen Cadarso-Suárez
autoimage: Multiple Heat Maps for Projected Coordinates (p. 284)
Joshua P. French
Market Area Analysis for Retail and Service Locations with MCI (p. 298)
Thomas Wieland
PSF: Introduction to R Package for Pattern Sequence Based Forecasting Algorithm (p. 324)
Neeraj Bokde, Gualberto Asencio-Cortés, Francisco Martínez-Álvarez, Kishore Kulat
flan: An R Package for Inference on Mutation Models. (p. 334)
Adrien Mazoyer, Rémy Drouilhet, Stéphane Despréaux, Bernard Ycart
Multilabel Classification with R Package mlr (p. 352)
Philipp Probst, Quay Au, Giuseppe Casalicchio, Clemens Stachl, Bernd Bischl
Counterfactual: An R Package for Counterfactual Analysis (p. 370)
Mingli Chen, Victor Chernozhukov, Iván Fernández-Val, Blaise Melly
Retrieval and Analysis of Eurostat Open Data with the eurostat Package (p. 385)
Leo Lahti, Janne Huovari, Markus Kainu, Przemysław Biecek
PGEE: An R Package for Analysis of Longitudinal Data with High-Dimensional Covariates (p. 393)
Gul Inan, Lan Wang
BayesBinMix: an R Package for Model Based Clustering of Multivariate Binary Data (p. 403)
Panagiotis Papastamoulis, Magnus Rattray
pdp: An R Package for Constructing Partial Dependence Plots (p. 421)
Brandon M. Greenwell
checkmate: Fast Argument Checks for Defensive R Programming (p. 437)
Michel Lang
milr: Multiple-Instance Logistic Regression with Lasso Penalty (p. 446)
Ping-Yang Chen, Ching-Chuan Chen, Chun-Hao Yang, Sheng-Mao Chang, Kuo-Jung Lee
spcadjust: An R Package for Adjusting for Estimation Error in Control Charts (p. 458)
Axel Gandy, Jan Terje Kvaløy
Weighted Effect Coding for Observational Data with wec (p. 477)
Rense Nieuwenhuis, Manfred te Grotenhuis, Ben Pelzer
Hosting Data Packages via drat: A Case Study with Hurricane Exposure Data (p. 486)
G. Brooke Anderson, Dirk Eddelbuettel
News and Notes
News from the Bioconductor Project (p. 508)
Bioconductor Core Team
Changes in R (pp. 509-521)
The R Core Team
Changes on CRAN (pp. 505-507)
Kurt Hornik, Uwe Ligges, Achim Zeileis
Conference Report: European R Users Meeting 2016 (pp. 501-504)
Maciej Beręsewicz, Adolfo Alvarez, Przemysław Biecek, Marcin K. Dyderski, Marcin Kosiński, Jakub Nowosad, Kamil Rotter, Alicja Szabelska-Beręsewicz, Marcin Szymkowiak, Łukasz Wawrowski, Joanna Zyprych-Walczak
R Foundation News (pp. 498-500)
Torsten Hothorn