Agram, PS, and M Simons. 2015. “A Noise Model for
InSAR Time Series.” Journal of
Geophysical Research: Solid Earth 120 (4): 2752–71.
Anderson, Kyle R, Ingrid A Johanson, Matthew R Patrick, Mengyang Gu,
Paul Segall, Michael P Poland, Emily K Montgomery-Brown, and Asta
Miklius. 2019. “Magma Reservoir Failure and the Onset of Caldera
Collapse at Kı̄lauea Volcano in 2018.”
Science 366 (6470).
Arendt, Paul D, Daniel W Apley, and Wei Chen. 2012.
“Quantification of Model Uncertainty: Calibration, Model
Discrepancy, and Identifiability.” Journal of Mechanical
Design 134 (10): 100908.
Bayarri, Maria J, James O Berger, Rui Paulo, Jerry Sacks, John A Cafeo,
James Cavendish, Chin-Hsu Lin, and Jian Tu. 2007. “A Framework for
Validation of Computer Models.” Technometrics 49 (2):
138–54.
Bayarri, MJ, JO Berger, J Cafeo, G Garcia-Donato, F Liu, J Palomo, RJ
Parthasarathy, R Paulo, J Sacks, and D Walsh. 2007. “Computer
Model Validation with Functional Output.” The Annals of
Statistics 35 (5): 1874–1906.
Box, GEP, and GA Coutie. 1956. “Application of Digital Computers
in the Exploration of Functional Relationships.” Proceedings
of the IEE-Part B: Radio and Electronic Engineering 103 (1S):
100–107.
Brajard, Julien, Alberto Carrassi, Marc Bocquet, and Laurent Bertino.
2020. “Combining Data Assimilation and Machine Learning to Emulate
a Dynamical Model from Sparse and Noisy Observations: A Case Study with
the Lorenz 96 Model.” Journal of Computational
Science 44: 101171.
Carmassi, Mathieu, Pierre Barbillon, Matthieu Chiodetti, Merlin Keller,
and Eric Parent. 2018. “CaliCo: A R
Package for Bayesian Calibration.” arXiv
Preprint arXiv:1808.01932.
Chang, Won, Murali Haran, Patrick Applegate, and David Pollard. 2016.
“Calibrating an Ice Sheet Model Using High-Dimensional Binary
Spatial Data.” Journal of the American Statistical
Association 111 (513): 57–72.
Chang, Won, Bledar A Konomi, Georgios Karagiannis, Yawen Guan, and
Murali Haran. 2022. “Ice Model Calibration Using Semicontinuous
Spatial Data.” The Annals of Applied Statistics 16 (3):
1937–61.
Gu, Mengyang. 2019. “Jointly Robust Prior for
Gaussian Stochastic Process in Emulation, Calibration and
Variable Selection.” Bayesian Analysis 14 (1).
Gu, Mengyang, Kyle Anderson, and Erika McPhillips. 2023.
“Calibration of Imperfect Geophysical Models by Multiple Satellite
Interferograms with Measurement Bias.” Technometrics, In
Press.
https://doi.org/10.1080/00401706.2023.2182365.
Gu, Mengyang, Jesus Palomo, and James O. Berger. 2019.
“RobustGaSP: Robust Gaussian Stochastic Process Emulation
in R.” The R Journal 11 (1): 112–36.
https://doi.org/10.32614/RJ-2019-011.
Gu, Mengyang, and Long Wang. 2018. “Scaled Gaussian
Stochastic Process for Computer Model Calibration and
Prediction.” SIAM/ASA Journal on Uncertainty
Quantification 6 (4): 1555–83.
Gu, Mengyang, Fangzheng Xie, and Long Wang. 2022. “A Theoretical
Framework of the Scaled Gaussian Stochastic Process in
Prediction and Calibration.” SIAM/ASA Journal on Uncertainty
Quantification 10 (4): 1435–60.
Hankin, Robin KS. 2005. “Introducing BACCO, an
R Bundle for Bayesian Analysis of Computer
Code Output.” Journal of Statistical Software 14: 1–21.
Higdon, Dave, James Gattiker, Brian Williams, and Maria Rightley. 2008.
“Computer Model Calibration Using High-Dimensional Output.”
Journal of the American Statistical Association 103 (482):
570–83.
Kennedy, Marc C, and Anthony O’Hagan. 2001. “Bayesian Calibration
of Computer Models.” Journal of the Royal Statistical
Society: Series B (Statistical Methodology) 63 (3): 425–64.
Liu, Dong C, and Jorge Nocedal. 1989. “On the Limited Memory
BFGS Method for Large Scale Optimization.”
Mathematical Programming 45 (1-3): 503–28.
Liu, Fei, MJ Bayarri, and JO Berger. 2009. “Modularization in
Bayesian Analysis, with Emphasis on Analysis of Computer
Models.” Bayesian Analysis 4 (1): 119–50.
Lorenz, Edward N. 1996. “Predictability: A Problem Partly
Solved.” In Proc. Seminar on Predictability. Vol. 1. 1.
MacDonald, Blake, Pritam Ranjan, Hugh Chipman, et al. 2015.
“GPfit: An R Package for Fitting a
Gaussian Process Model to Deterministic Simulator
Outputs.” Journal of Statistical Software 64 (i12).
Maclean, John, and Elaine T Spiller. 2020. “A Surrogate-Based
Approach to Nonlinear, Non-Gaussian Joint State-Parameter
Data Assimilation.” arXiv Preprint arXiv:2012.04793.
Palomo, Jesús, Rui Paulo, Gonzalo Garcı́a-Donato, et al. 2015.
“SAVE: An R Package for the Statistical Analysis of
Computer Models.” Journal of Statistical Software 64
(13): 1–23.
Paulo, Rui, Gonzalo Garcı́a-Donato, and Jesús Palomo. 2012.
“Calibration of Computer Models with Multivariate Output.”
Computational Statistics and Data Analysis 56 (12): 3959–74.
Plumlee, Matthew. 2017. “Bayesian Calibration of Inexact Computer
Models.” Journal of the American Statistical Association
112 (519): 1274–85.
Roustant, Olivier, David Ginsbourger, and Yves Deville. 2012.
“DiceKriging, DiceOptim: Two R Packages
for the Analysis of Computer Experiments by Kriging-Based Metamodeling
and Optimization.” Journal of Statistical Software 51:
1–55.
Sacks, Jerome, William J Welch, Toby J Mitchell, Henry P Wynn, et al.
1989. “Design and Analysis of Computer Experiments.”
Statistical Science 4 (4): 409–23.
Santner, Thomas J, Brian J Williams, and William I Notz. 2003. The
Design and Analysis of Computer Experiments. Springer Science &
Business Media.
Simakov, Nikolay A, Renette L Jones-Ivey, Ali Akhavan-Safaei, Hossein
Aghakhani, Matthew D Jones, and Abani K Patra. 2019. “Modernizing
Titan2D, a Parallel AMR
Geophysical Flow Code to Support Multiple Rheologies and
Extendability.” In International Conference on High
Performance Computing, 101–12. Springer.
Soetaert, Karline, Thomas Petzoldt, and R Woodrow Setzer. 2010.
“Solving Differential Equations in R: Package
deSolve.” Journal of Statistical Software
33: 1–25.
Tuo, Rui, and CF Jeff Wu. 2015. “Efficient Calibration for
Imperfect Computer Models.” The Annals of Statistics 43
(6): 2331–52.
Wickham, Hadley. 2011. “Ggplot2.” Wiley
Interdisciplinary Reviews: Computational Statistics 3 (2): 180–85.
Williamson, Daniel, Michael Goldstein, Lesley Allison, Adam Blaker,
Peter Challenor, Laura Jackson, and Kuniko Yamazaki. 2013.
“History Matching for Exploring and Reducing Climate Model
Parameter Space Using Observations and a Large Perturbed Physics
Ensemble.” Climate Dynamics 41 (7-8): 1703–29.
Wong, Raymond KW, Curtis B Storlie, and Thomas Lee. 2017. “A
Frequentist Approach to Computer Model Calibration.” Journal
of the Royal Statistical Society: Series B (Statistical
Methodology) 79: 635–48.
Ypma, Jelmer. 2014.
Nloptr: R Interface to NLopt.
https://CRAN.R-project.org/package=nloptr.
Zebker, Howard A., Paul A. Rosen, and Scott Hensley. 1997.
“Atmospheric effects in interferometric synthetic aperture
radar surface deformation and topographic maps.”
Journal of Geophysical Research: Solid Earth 102 (B4): 7547–63.
https://doi.org/10.1029/96JB03804.