| atoxgr_criteria_daids | R Documentation |
Metadata Holding Grading Criteria for DAIDs using SI unit where applicable
Description
Metadata Holding Grading Criteria for DAIDs using SI unit where applicable
Usage
atoxgr_criteria_daids
Format
An object of class data.frame with 63 rows and 14 columns.
Details
This metadata has its origin in the ADLB Grading Spec json file data-raw/adlb_grading/DAIDS.json.
The variables GRADE_NA_CODE, GRADE_4_CODE, GRADE_3_CODE, GRADE_2_CODE and GRADE_1_CODE in
the json file are combined to create GRADE_CRITERIA_CODE, and then dropped from metadata.
The dataset contains the following columns:
-
SOC: variable to hold the SOC of the lab test criteria. -
TERM: variable to hold the term describing the criteria applied to a particular lab test, eg. 'Anemia' or 'INR Increased'. Note: the variable is case insensitive. -
SUBGROUP: Description of sub-group of subjects were grading will be applied (i.e. >= 18 years) -
Grade 1: Criteria defining lab value as Grade 1. -
Grade 2: Criteria defining lab value as Grade 2. -
Grade 3: Criteria defining lab value as Grade 3. -
Grade 4: Criteria defining lab value as Grade 4. -
Grade 5: Criteria defining lab value as Grade 5. -
Definition: Holds the definition of the lab test abnormality. -
FILTER:admiralcode to apply the filter based on SUBGROUP column. -
GRADE_CRITERIA_CODE: variable to hold code that creates grade based on defined criteria. -
UNIT_CHECK: variable to hold SI unit of particular lab test. Used to check against input data if criteria is based on absolute values. -
VAR_CHECK: List of variables required to implement lab grade criteria. Use to check against input data. -
DIRECTION: variable to hold the direction of the abnormality of a particular lab test value. 'L' is for LOW values, 'H' is for HIGH values. Note: the variable is case insensitive. -
COMMENT: Holds any information regarding rationale behind implementation of grading criteria.
Note: Variables SOC, TERM, SUBGROUP, Grade 1, Grade 2,Grade 3,Grade 4,Grade 5, Definition
are from the source document on DAIDS website defining the grading criteria, (Division of AIDS (DAIDS) Table
for Grading the Severity of Adult and Pediatric Adverse Events).
From these variables only 'TERM' is used in the {admiral} code, the rest are for information and
traceability only.
See Also
Other metadata:
atoxgr_criteria_ctcv4,
atoxgr_criteria_ctcv4_uscv,
atoxgr_criteria_ctcv5,
atoxgr_criteria_ctcv5_uscv,
atoxgr_criteria_ctcv6,
atoxgr_criteria_ctcv6_uscv,
atoxgr_criteria_daids_uscv,
country_code_lookup,
dose_freq_lookup